{"id":4721,"date":"2018-05-22T08:01:59","date_gmt":"2018-05-22T08:01:59","guid":{"rendered":"http:\/\/imas12.es\/en\/?page_id=4721"},"modified":"2018-05-22T08:01:59","modified_gmt":"2018-05-22T08:01:59","slug":"bioinformatics-unit","status":"publish","type":"page","link":"https:\/\/imas12.es\/en\/services\/bioinformatics-unit\/","title":{"rendered":"Bioinformatics Unit"},"content":{"rendered":"<div class=\"wpb-content-wrapper\"><p>[vc_row][vc_column][vc_tta_tabs style=&#8221;modern&#8221; color=&#8221;orange&#8221; active_section=&#8221;1&#8243;][vc_tta_section title=&#8221;Overview&#8221; tab_id=&#8221;1526898295522-a2cfee66-12fd&#8221;][vc_column_text]<\/p>\n<p>The Bioinformatics Unit was created to respond to the growing demand for the handling and analysis of data obtained mainly from new massive sequencing platforms (Next-Generation Sequencing, NGS).<\/p>\n<p>Its main functions are:<\/p>\n<ul>\n<li>Providing the necessary support for the analysis of NGS results.<\/li>\n<li>Monitoring the servers of the sequencing platforms, the computer cluster and the data storage system.<\/li>\n<li>The unit also aims to train and collaborate with its users in the use and development of adequate bioinformatic tools for each case.<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p>[\/vc_column_text][\/vc_tta_section][vc_tta_section title=&#8221;Service portfolio&#8221; tab_id=&#8221;1526898295545-4b8d0cc7-e8fb&#8221;][vc_column_text]<\/p>\n<p>The key services offered by the Bioinformatics Unit of the i+12 Institute are:<\/p>\n<ul>\n<li>Consulting service concerning the design of sequencing experiments involving the use of the equipment available at the i+12 Institute.<\/li>\n<li>Processing, analysis and interpretation of the results obtained mainly from the NGS platforms present at the i+12 Institute.<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p>[\/vc_column_text][\/vc_tta_section][vc_tta_section title=&#8221;Facilities and infrastructure&#8221; tab_id=&#8221;1526898297350-3f399693-a6ef&#8221;][vc_column_text]<\/p>\n<p>The Bioinformatics Unit of the i+12 Institute features the following scientific equipment:<\/p>\n<ul>\n<li>NGS sequencing servers. i+12 Genomics:\n<ul>\n<li>Dell Precision T7500: 2 x Intel Xeon X5650 (6 cores), 48 GB RAM, 11 TB.<\/li>\n<li>Dell PowerEdge T630: 2 x Intel Xeon E5-2680v3 (12 cores), 128 GB RAM, 28 TB.<\/li>\n<li>HP Z400: Intel Xeon W3550 (4 cores), 12 GB RAM, 620 GB.<\/li>\n<\/ul>\n<\/li>\n<li>Quimera cluster i+12-CPD H12O:\n<ul>\n<li>2 R423-E3 management nodes: 4 x Intel Xeon E5-2650v2 (8 cores), 128 GB RAM.<\/li>\n<li>4 R421-E3 computing servers: 8 x Intel Xeon E5-2650v2 (10 cores), 320 GB RAM, 2x GPU K20m (5GB).<\/li>\n<li>Storage cabin: E2700 (130TB).<\/li>\n<\/ul>\n<\/li>\n<li>Dell T7610 work station (2x Intel Xeon E5-2630v2 [6 cores], 64GB RAM, 2.3 TB). Rare, Mitochondrial and Neuromuscular Diseases Group.<\/li>\n<li>Dell T7610 work station (2x Intel Xeon E5-2630v2 [6 cores], 64GB RAM, 2.3 TB). Genetics and Heritage Group.<\/li>\n<li>Dell T7600 work station (2x Intel Xeon E5-2630 [6 cores], 64GB RAM, 2.4 TB). Translational Hematology Group.<\/li>\n<li>Network Attached Storage (NAS) Synology: RS18017XS+ (100 TB), DS1813+ (38 TB), DS415Play (6 TB).<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p>[\/vc_column_text][\/vc_tta_section][vc_tta_section title=&#8221;Staff and contact information&#8221; tab_id=&#8221;1526898298040-66e046ee-5a22&#8243;][vc_column_text]<\/p>\n<ul>\n<li><strong>Coordinator:<\/strong> Francisco Javier Fern\u00e1ndez Mart\u00ednez (<a href=\"mailto:ffernandezm@salud.madrid.org\">ffernandezm@salud.madrid.org<\/a>)<\/li>\n<li><strong>Responsible Technician: <\/strong>Aitor Delmiro Magdalena (<a href=\"mailto:adelmiro@h12o.es\" target=\"_blank\" rel=\"noopener\">adelmiro@h12o.es<\/a>)<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p>[\/vc_column_text][\/vc_tta_section][vc_tta_section title=&#8221;Rates&#8221; tab_id=&#8221;1526898298790-90437c29-5c50&#8243;][vc_column_text]<a href=\"http:\/\/imas12.es\/wp-content\/uploads\/2018\/Servicios\/Rates_ENG\/Bioinformatics rates 2018.pdf\" target=\"_blank\" rel=\"noopener\">Access to rates of the Bioinformatics Unit<\/a>.<\/p>\n<p>[\/vc_column_text][\/vc_tta_section][\/vc_tta_tabs][\/vc_column][\/vc_row]<\/p>\n<\/div>","protected":false},"excerpt":{"rendered":"<p>[vc_row][vc_column][vc_tta_tabs style=&#8221;modern&#8221; color=&#8221;orange&#8221; active_section=&#8221;1&#8243;][vc_tta_section title=&#8221;Overview&#8221; tab_id=&#8221;1526898295522-a2cfee66-12fd&#8221;][vc_column_text] The Bioinformatics Unit was created to respond to the growing demand for the handling and analysis of data obtained mainly from new massive sequencing platforms (Next-Generation Sequencing, NGS). Its main functions are: Providing the&#8230;<\/p>\n","protected":false},"author":8,"featured_media":0,"parent":94,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-4721","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/imas12.es\/en\/wp-json\/wp\/v2\/pages\/4721","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/imas12.es\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/imas12.es\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/imas12.es\/en\/wp-json\/wp\/v2\/users\/8"}],"replies":[{"embeddable":true,"href":"https:\/\/imas12.es\/en\/wp-json\/wp\/v2\/comments?post=4721"}],"version-history":[{"count":6,"href":"https:\/\/imas12.es\/en\/wp-json\/wp\/v2\/pages\/4721\/revisions"}],"predecessor-version":[{"id":4788,"href":"https:\/\/imas12.es\/en\/wp-json\/wp\/v2\/pages\/4721\/revisions\/4788"}],"up":[{"embeddable":true,"href":"https:\/\/imas12.es\/en\/wp-json\/wp\/v2\/pages\/94"}],"wp:attachment":[{"href":"https:\/\/imas12.es\/en\/wp-json\/wp\/v2\/media?parent=4721"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}